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iCn3D basics
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1,995Views
2021Oct 22
I demonstrate some basic functions in iCn3D. 1. Finding and opening a molecular structure. 2. Zooming in (Z) or out (X). 3. Moving a structure without turning it. Ctrl + click and drag 4. Turning a structure. Click and drag.

Follow along using the transcript.

Digital World Biology LLC

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iCn3D

iCn3D basics

Digital World Biology LLC
2

Making an element color key in iCn3D

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3

Viewing an individual nucleotide in iCn3D

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4

Peptide bonds

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5

Using iCn3D to identify amino acids by charge

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6

Viewing disufide bonds in iCn3D

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7

Identifying and viewing ionic bonds / salt bridges with iCn3D

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8

Finding and viewing hydrogen bonds in iCn3D

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9

Using iCn3D to look at hydrophobicity

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10

Finding and identifying hydrophobic interactions in iCn3D

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11

Identifying metal bonds using iCn3D

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12

Drug discovery 1: How does the new SARS-CoV-2 protease inhibitor block protease activity?

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Drug discovery 3 - Is my protein likely to bind to this inhibitor?

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14

Drug discovery 2: using protein BLAST for drug discovery

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15

Using aligned structures to view a conformational change in the SARS-CoV-2 spike protein

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16

SARS CoV 2 variants vs Antibodies

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